Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015837437.1_cds_XP_016506623.1_19830
CDS Infomation

[gene=LOC107824392] [db_xref=GeneID:107824392] [protein=carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2] [protein_id=XP_016506623.1] [location=complement(join(45679..45789,45899..46006,46180..46238,46317..46626,46917..47055,47159..47221,47312..47393,47507..47585,47723..47905,48498..48785))] [gbkey=CDS]
Sequence

ATGGTGTGGAGCATTATTGCAGGCCCAAACCCTCTGTTTGGAGGGCTAAAATCGACAAGA
TCTATATTTGGTGAATCAGACCATATGTGGGTTGAAGGAGAAGGAATGCTTCACGCGTTG
TACTTGAAGAAAAATGGAAGAATTAGGGGCAGCTGGAATATATTGTACAAGAACAAACAT
GTCCAAACAGATACTTACAAAATGGAAAAGGATAGAAAAAAACCAGGTTTTCTTCCTGCT
ATTGAAGGCGATTCTCCTGCTGTCTTACTGGCGTACCTTCTAAATGTGTTGAGGTTTGGC
GTGATAGACAAATACCTGAGCAATACTAATGTATTTGAACATGCAAAGAAATATTACTCA
ATTGCTGAGAACCATATGCCTCAAGAGATCGACATACATTCCCTAGAAACACTGGAAAAT
TGGAATGTTATAAGTGGATCTTGGACCAGACCATTCACAAGCCACCCCAAGAAAGCACCT
GGCACAGGAGAACTTGTTGTAATAGGTATTGATGCACAAAAGCCTTATTTTGAACTTGGT
GTGATTTCAGCTGATGGAAAGAAAATGGTTCACAAAGCGGATCTCATGTTCGATAGGTGT
ACAGTTTGCCATGAAATAGGAGTCACACAAAGATACAATGTGATCATGAATTTCCCACTA
ACTATTGACATAAGTCGACTTGTTCTGGGAGGCTCGTTAATGAGGTTTGAAGAAAACGGA
TACGCAAGAATTGGTATAATGCCACGCTATGGGGATGCCAATTCCATCAAATGGTTTGAA
GTCGAACCTTGTTGTGTATTTCACATCATTAACTGCTTCGAAGATAATGATGAGGTGGTG
GTGAGAGCATGTAGAGCTCGTCAATCAGTTATACCTGGACCTAATTCTAGAGTCAACCAC
TTTGAGAAATGGTTAAAGGGAAGAAGTTCCAAAGATGAAAGAATTGAATTCACCAAAGAA
TCAACTTTTCCTCGTGTTTGTGAATGGAGATTGAACATGAAAACTGGAGAAGTTAGAGAG
AAGAAGAATCTATCTGGTGACGAGTTTGCAATGGAATTCCCTTTGATCAATGAAAAGTTC
ACTGGATTTAGAAATAAGTTTGCTTATCTACAAGTTGTTGAGTCAACAGAAATATCTGGC
TCAGGATTCACAAGATTTGGAGGAGTAGCCAAGCTTCATTTTGAAGAAAAAAGAATCCCT
ACGAACACCTTTTGTTCTGGAGCTTCCTTTGTTCCAAAACCTGGAGGCGTCGACGAGGAC
GATGGTTGGATCATCACATTTACGCATAATGAAAATGAAAATATTTCTCAAGTTTATATA
GTTGATGCAAAGAAATTTACGAATGAGCCAGTTGCCATAATCACATTACCAAGTAGGGTG
CCATACGGATTTCATGGAGCTTTCATGCCATTAGAGTCTTAG

Peptide Sequence

PEP ID

XP_016506623.1
PEP Infomation

PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2 [Nicotiana tabacum]
Sequence

MVWSIIAGPNPLFGGLKSTRSIFGESDHMWVEGEGMLHALYLKKNGRIRGSWNILYKNKH
VQTDTYKMEKDRKKPGFLPAIEGDSPAVLLAYLLNVLRFGVIDKYLSNTNVFEHAKKYYS
IAENHMPQEIDIHSLETLENWNVISGSWTRPFTSHPKKAPGTGELVVIGIDAQKPYFELG
VISADGKKMVHKADLMFDRCTVCHEIGVTQRYNVIMNFPLTIDISRLVLGGSLMRFEENG
YARIGIMPRYGDANSIKWFEVEPCCVFHIINCFEDNDEVVVRACRARQSVIPGPNSRVNH
FEKWLKGRSSKDERIEFTKESTFPRVCEWRLNMKTGEVREKKNLSGDEFAMEFPLINEKF
TGFRNKFAYLQVVESTEISGSGFTRFGGVAKLHFEEKRIPTNTFCSGASFVPKPGGVDED
DGWIITFTHNENENISQVYIVDAKKFTNEPVAIITLPSRVPYGFHGAFMPLES

Transcript Sequence

Gene sequence data has not been registered.